MORPHEUS (revision 142) LOG

PARAMETERS
Input Data File: /home/lev/pyteomics_filtering_example/example.mzML
Unknown Precursor Charge State Range: +2..+4
Absolute MS/MS Intensity Threshold: disabled
Relative MS/MS Intensity Threshold: disabled
Maximum Number of MS/MS Peaks: 400
Assign Charge States: true
De-isotope: false
Protein FASTA Database: /home/lab006/fasta/sprot_human_decoy.fasta
Create Target–Decoy Database On The Fly: false
Protease: trypsin (no proline rule)
Maximum Missed Cleavages: 2
Initiator Methionine Behavior: variable
Fixed Modifications: carbamidomethylation of C
Variable Modifications: none
Maximum Variable Modification Isoforms Per Peptide: 1024
Precursor Mass Tolerance: ±10 ppm (monoisotopic)
Precursor Monoisotopic Peak Correction: 0..+1
Product Mass Tolerance: ±0.5 Da (monoisotopic)
Maximum False Discovery Rate: 1%
Consider Modified Forms as Unique Peptides: false
Maximum Threads: 12
Minimize Memory Usage: false
Output Folder: /home/lev/pyteomics_filtering_example

RESULTS
40,494 total (20,247 target + 20,247 decoy + 0 on-the-fly decoy) proteins
7,757,214 total (3,907,752 target + 3,849,462 decoy) non-unique peptides
21,312 MS/MS spectra
758 target (7 decoy) PSMs at 0.937% PSM FDR (17.076 Morpheus score threshold)
746 unique target (7 decoy) peptides at 0.953% unique peptide FDR (17.076 Morpheus score threshold)
412 target (4 decoy) protein groups at 0.971% protein group FDR (18.074 summed Morpheus score threshold)
1.54 minutes to analyze
